PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YB
Protein Properties Length: 159aa    MW: 18161.4 Da    PI: 6.5205
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.84.4e-5532127297
                                                  NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqre 57 
                                                            +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++e
  augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1  32 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKE 87 
                                                            79****************************************************** PP

                                                  NF-YB  58 krktingddllwalatlGfedyveplkvylkkyrelegek 97 
                                                            krkt+ngdd++walatlGf+dy+epl+ yl++yrelege+
  augustus_masked-scaffold00235-abinit-gene-1.11-mRNA-1  88 KRKTVNGDDICWALATLGFDDYAEPLRRYLQRYRELEGER 127
                                                            *************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.1E-5528148IPR009072Histone-fold
SuperFamilySSF471131.49E-4134147IPR009072Histone-fold
PfamPF008085.9E-2837101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-196583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-1984102No hitNo description
PRINTSPR006151.1E-19103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MVDNMVNNSE REGFKYHFAG ASTSSGEDGV LKEQDRLLPI ANVGRIMKQI LPPNAKISKE  60
AKETMQECVS EFISFVTGEA SDKCHKEKRK TVNGDDICWA LATLGFDDYA EPLRRYLQRY  120
RELEGERAQQ SKGSNNEEKN EHQTMELKHQ GKQRIQLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4531122192Transcription factor HapC (Eurofung)
4g92_B7e-4531122192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082708.13e-84PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO822489e-61NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A067K7773e-84A0A067K777_JATCU; Uncharacterized protein
STRINGPOPTR_0014s12710.13e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-53nuclear factor Y, subunit B5